PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g20950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 318aa    MW: 35614.5 Da    PI: 5.4247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g20950genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00154767323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C+ C+k F +   L  H+r H
  CA07g20950 47 CHVCSKGFGSGKALGGHMRIH 67
                *******************99 PP

2zf-C2H214.78.9e-05107126221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 +C++Cgk F++  +L  H+r
  CA07g20950 107 TCSICGKNFPSMKSLFGHMR 126
                 6******************8 PP

3zf-C2H2140.00015241256116
                 EEETTTTEEESSHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnL 16 
                 ykC+ Cgk+F ++  L
  CA07g20950 241 YKCNTCGKTFATHQAL 256
                 9**********99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-54269No hitNo description
PfamPF139122.4E-84567IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1414572IPR007087Zinc finger, C2H2
SMARTSM003550.564567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM003550.018106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598106128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4107128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.95E-9107128No hitNo description
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
PfamPF139123.9E-8108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-9236260No hitNo description
PfamPF139124.4E-7241261IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-4241259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527241261IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64241272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEIGTGSLWI SEDDKFEDHE YDDVKDDEVE IPKNKNDDDD DNKRRICHVC SKGFGSGKAL  60
GGHMRIHVQA SKKLLLSKSK TLVDRYYKKP VLQTDEEEEE EDQLLPTCSI CGKNFPSMKS  120
LFGHMRCHPE RAWRGIQPPE DIDRKTAAAS TVTVPVWSVT AKRGRKANAE DATYSGSKDE  180
EQLHDAVHHL MLLANGDSIE SGLTGGIPEK TNSNSLTSKA ENENEASNKK KTKLRHLDEN  240
YKCNTCGKTF ATHQALGGHN KFRIVIQNSD VTNIGANSED AAVSQRILDF DLNELPPDHE  300
DEQLSPNHEY YFPFFPI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579573.10.0PREDICTED: zinc finger protein ZAT2
TrEMBLM1C0521e-99M1C052_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000569573e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-20C2H2-like zinc finger protein